If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ), 'gf_id' => 'HOM05D000819', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000819' ), 'data_identifier' => 'HOM05D000819', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000819', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p06950' => 'bna', 'A03p23780' => 'bna', 'A04p02430' => 'bna', 'A04p12640' => 'bna', 'A05p03370' => 'bna', 'A06p14530' => 'bna', 'A09p51200' => 'bna', 'A10p23740' => 'bna', 'Aa31LG10G13250' => 'aar', 'Aa31LG11G14430' => 'aar', 'Aa31LG1G24450' => 'aar', 'Aa31LG7G3180' => 'aar', 'Aa31LG9G1690' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3055' => 'aag', 'Actinidia02704' => 'ach', 'Actinidia03932' => 'ach', 'Actinidia10951' => 'ach', 'Actinidia16064' => 'ach', 'Actinidia17535' => 'ach', 'Actinidia33574' => 'ach', 'Ah.09g233240' => 'amhyb', 'Ah.12g065410' => 'amhyb', 'Ah.14g087070' => 'amhyb', 'AL1G30930' => 'aly', 'AL4G41220' => 'aly', 'AL5G40430' => 'aly', 'AL6G25940' => 'aly', 'AL7G50250' => 'aly', 'Aqoxy1G00532' => 'aox', 'Aqoxy3G00734' => 'aox', 'Aqoxy3G03292' => 'aox', 'Aqoxy3G03814' => 'aox', 'Aqoxy4G00318' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1XY4MV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27MJ8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3EJS5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59W0UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z1ZDF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62QAW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ENZ3P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83X2A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KK4PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L9TXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7903H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0R217' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C76MJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GLQ651' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVCT2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H82Y5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA16C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IBZD19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG2N33' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZ7QTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDLK3J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2R76V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXAL56' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P69VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PURH4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5HJX7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNY0QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PJJB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1DCFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4WU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9A69F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6QUW3' => 'arhy', 'AT1G18490' => 'ath', 'AT2G42670' => 'ath', 'AT3G58670' => 'ath', 'AT5G15120' => 'ath', 'AT5G39890' => 'ath', 'ATR0602G007' => 'atr', 'ATR0691G258' => 'atr', 'ATR1120G010' => 'atr', 'Atru.chr10.1651' => 'acertr', 'Atru.chr13.1129' => 'acertr', 'Atru.chr2.1482' => 'acertr', 'Atru.chr6.2775' => 'acertr', 'Atru.chr8.2688' => 'acertr', 'Atru.chr9.667' => 'acertr', 'AUR62008427' => 'cqu', 'AUR62021666' => 'cqu', 'AUR62021668' => 'cqu', 'AUR62027693' => 'cqu', 'AUR62029902' => 'cqu', 'AUR62031221' => 'cqu', 'AUR62031629' => 'cqu', 'AUR62038436' => 'cqu', 'AUR62038864' => 'cqu', 'AUR62041182' => 'cqu', 'BcaB01g03424' => 'bca', 'BcaB01g05080' => 'bca', 'BcaB01g05081' => 'bca', 'BcaB01g05082' => 'bca', 'BcaB02g07508' => 'bca', 'BcaB02g08242' => 'bca', 'BcaB06g27389' => 'bca', 'BcaB07g31859' => 'bca', 'BcaB08g36926' => 'bca', 'BcaC04g18984' => 'bca', 'BcaC05g25746' => 'bca', 'BcaC06g35776' => 'bca', 'BcaC07g40215' => 'bca', 'BcaC07g42016' => 'bca', 'BolC3t13291H' => 'bol', 'BolC3t15206H' => 'bol', 'BolC4t22031H' => 'bol', 'BolC4t24950H' => 'bol', 'BolC4t26222H' => 'bol', 'BolC5t30377H' => 'bol', 'BolC5t33711H' => 'bol', 'BolC8t50998H' => 'bol', 'BolC8t52600H' => 'bol', 'BolC9t59042H' => 'bol', 'BraA03t10017Z' => 'bra', 'BraA03t11591Z' => 'bra', 'BraA04t15973Z' => 'bra', 'BraA04t16921Z' => 'bra', 'BraA05t19326Z' => 'bra', 'BraA06t24579Z' => 'bra', 'BraA09t40564Z' => 'bra', 'BraA10t44436Z' => 'bra', 'C03p07940' => 'bna', 'C03p28350' => 'bna', 'C04p03950' => 'bna', 'C04p33830' => 'bna', 'C04p46360' => 'bna', 'C05p16760' => 'bna', 'C05p54770' => 'bna', 'C08p34000' => 'bna', 'C09p48570' => 'bna', 'C09p62030' => 'bna', 'C09p63120' => 'bna', 'CAN.G1081.9' => 'can', 'CAN.G1711.12' => 'can', 'CAN.G1711.13' => 'can', 'CAN.G1716.3' => 'can', 'CAN.G206.125' => 'can', 'CAN.G685.4' => 'can', 'CAN.G982.13' => 'can', 'CANSAT25G1980' => 'cansat', 'CANSAT64G0884' => 'cansat', 'CANSAT64G1572' => 'cansat', 'CANSAT78G0445' => 'cansat', 'CANSAT80G0579' => 'cansat', 'CARHR019110' => 'chi', 'CARHR137780' => 'chi', 'CARHR169050' => 'chi', 'CARHR198200' => 'chi', 'CARHR262290' => 'chi', 'Carub.0001s1812' => 'cru', 'Carub.0004s2511' => 'cru', 'Carub.0005s2546' => 'cru', 'Carub.0006s1329' => 'cru', 'Carub.0007s3583' => 'cru', 'Ca_00443_v3' => 'car', 'Ca_01712_v3' => 'car', 'Ca_02685_v3' => 'car', 'Ca_04271_v3' => 'car', 'Ca_08302_v3' => 'car', 'Ca_18869_v3' => 'car', 'Ca_25684_v3' => 'car', 'CBR_g713' => 'cbr', 'CBR_g72433' => 'cbr', 'Cc04_g07850' => 'ccan', 'Cc04_g15420' => 'ccan', 'Cc05_g08430' => 'ccan', 'Cc06_g17390' => 'ccan', 'Cc07_g03100' => 'ccan', 'CDE02G1655' => 'cde', 'CDE03G0109' => 'cde', 'CDE03G0244' => 'cde', 'CDE03G0353' => 'cde', 'CDE04G0868' => 'cde', 'CDE04G1895' => 'cde', 'CDE04G3253' => 'cde', 'CDE05G1730' => 'cde', 'CDE06G1499' => 'cde', 'CDE06G1769' => 'cde', 'CDE07G0709' => 'cde', 'CDE10G1299' => 'cde', 'Cfa000620' => 'cfa', 'Cfa007520' => 'cfa', 'Cfa013663' => 'cfa', 'Cfa017700' => 'cfa', 'Cfa019862' => 'cfa', 'Cfa023599' => 'cfa', 'Ciclev10011964m.g' => 'ccl', 'Ciclev10016481m.g' => 'ccl', 'Ciclev10021506m.g' => 'ccl', 'Ciclev10021575m.g' => 'ccl', 'CiPaw.03G029200' => 'cil', 'CiPaw.03G194800' => 'cil', 'CiPaw.04G019200' => 'cil', 'CiPaw.04G133500' => 'cil', 'CiPaw.07G177600' => 'cil', 'CiPaw.09G070600' => 'cil', 'CiPaw.09G168800' => 'cil', 'CiPaw.10G059900' => 'cil', 'CiPaw.16G081800' => 'cil', 'ClCG02G017880' => 'cla', 'ClCG04G005490' => 'cla', 'ClCG06G015220' => 'cla', 'ClCG08G011240' => 'cla', 'ClCG10G014900' => 'cla', 'COL.COLO4_08658' => 'col', 'COL.COLO4_12023' => 'col', 'COL.COLO4_25159' => 'col', 'COL.COLO4_28624' => 'col', 'COL.COLO4_33594' => 'col', 'Cpa.g.sc13.90' => 'cpa', 'Cpa.g.sc14.34' => 'cpa', 'Cpa.g.sc161.22' => 'cpa', 'Cpa.g.sc36.168' => 'cpa', 'Cpa.g.sc912.2' => 'cpa', 'Cre02.g092284' => 'cre', 'CsaV3_1G003120' => 'csa', 'CsaV3_3G041620' => 'csa', 'CsaV3_4G012050' => 'csa', 'CsaV3_6G015320' => 'csa', 'CSS0006175' => 'camsi', 'CSS0012614' => 'camsi', 'CSS0019389' => 'camsi', 'CSS0025514' => 'camsi', 'CSS0029023' => 'camsi', 'CSS0032444' => 'camsi', 'CSS0037259' => 'camsi', 'CSS0040948' => 'camsi', 'CSS0043029' => 'camsi', 'CSS0045226' => 'camsi', 'DCAR_003563' => 'dca', 'DCAR_006721' => 'dca', 'DCAR_009774' => 'dca', 'DCAR_011151' => 'dca', 'DCAR_011152' => 'dca', 'DCAR_013275' => 'dca', 'DCAR_013484' => 'dca', 'DCAR_020043' => 'dca', 'DCAR_022543' => 'dca', 'DCAR_023149' => 'dca', 'Dinv01706' => 'din', 'Dinv05566' => 'din', 'Dinv06521' => 'din', 'Dinv07703' => 'din', 'Dinv16785' => 'din', 'Dinv25058' => 'din', 'Dinv33732' => 'din', 'Dinv34210' => 'din', 'Dinv36854' => 'din', 'Dinv38614' => 'din', 'Dinv38673' => 'din', 'Dinv40691' => 'din', 'Duzib068G0976' => 'dzi', 'Duzib093G1478' => 'dzi', 'Duzib116G0784' => 'dzi', 'Duzib128G1417' => 'dzi', 'Duzib147G0689' => 'dzi', 'Duzib147G1317' => 'dzi', 'Duzib187G0639' => 'dzi', 'Duzib187G0832' => 'dzi', 'Duzib192G0479' => 'dzi', 'Duzib205G1963' => 'dzi', 'Duzib264G0269' => 'dzi', 'ECA234G2114' => 'eca', 'ECA238G0432' => 'eca', 'ECA246G5019' => 'eca', 'ECA248G1903' => 'eca', 'EL10Ac2g02944' => 'bvu', 'EL10Ac5g11031' => 'bvu', 'EL10Ac5g11728' => 'bvu', 'EL10Ac8g20588' => 'bvu', 'Eucgr.A01952' => 'egr', 'Eucgr.A02132' => 'egr', 'Eucgr.B00664' => 'egr', 'Eucgr.F00369' => 'egr', 'Eucgr.I01926' => 'egr', 'Eucgr.J02129' => 'egr', 'FAN02G0451' => 'fan', 'FAN02G0842' => 'fan', 'FAN02G1336' => 'fan', 'FAN04G3022' => 'fan', 'FAN05G0985' => 'fan', 'FAN05G1730' => 'fan', 'FAN05G2390' => 'fan', 'FAN05G4462' => 'fan', 'FAN08G2194' => 'fan', 'FAN08G2442' => 'fan', 'FAN09G0246' => 'fan', 'FAN09G2768' => 'fan', 'FAN09G3484' => 'fan', 'FAN13G0624' => 'fan', 'FAN14G1635' => 'fan', 'FAN14G4477' => 'fan', 'FAN14G5531' => 'fan', 'FAN18G0600' => 'fan', 'FAN18G2242' => 'fan', 'FvH4_5g13010' => 'fve', 'FvH4_5g36720' => 'fve', 'FvH4_6g18200' => 'fve', 'FvH4_6g27560' => 'fve', 'FvH4_6g49150' => 'fve', 'Glyma.02G208600' => 'gma', 'Glyma.04G156900' => 'gma', 'Glyma.06G208100' => 'gma', 'Glyma.06G276400' => 'gma', 'Glyma.09G240100' => 'gma', 'Glyma.12G128900' => 'gma', 'Glyma.12G211700' => 'gma', 'Glyma.13G064300' => 'gma', 'Glyma.13G228800' => 'gma', 'Glyma.13G290000' => 'gma', 'Glyma.14G176800' => 'gma', 'Glyma.15G083700' => 'gma', 'Glyma.15G207700' => 'gma', 'Glyma.16G037600' => 'gma', 'Glyma.17G187300' => 'gma', 'Glyma.18G256400' => 'gma', 'Glyma.19G020500' => 'gma', 'Glyma.19G115300' => 'gma', 'Glyma.19G115600' => 'gma', 'Gohir.A05G224500' => 'ghi', 'Gohir.A05G363700' => 'ghi', 'Gohir.A05G374400' => 'ghi', 'Gohir.A05G374900' => 'ghi', 'Gohir.A08G219533' => 'ghi', 'Gohir.A08G219800' => 'ghi', 'Gohir.A11G034700' => 'ghi', 'Gohir.A11G231100' => 'ghi', 'Gohir.D04G040800' => 'ghi', 'Gohir.D04G041200' => 'ghi', 'Gohir.D04G051000' => 'ghi', 'Gohir.D05G227000' => 'ghi', 'Gohir.D07G061700' => 'ghi', 'Gohir.D08G236901' => 'ghi', 'Gohir.D11G038200' => 'ghi', 'Gohir.D11G242400' => 'ghi', 'Gorai.001G065400' => 'gra', 'Gorai.004G251900' => 'gra', 'Gorai.007G040900' => 'gra', 'Gorai.007G256700' => 'gra', 'Gorai.009G234700' => 'gra', 'Gorai.012G046000' => 'gra', 'Gorai.012G046500' => 'gra', 'Gorai.012G056600' => 'gra', 'GSVIVG01008048001' => 'vvi', 'GSVIVG01008196001' => 'vvi', 'GSVIVG01009075001' => 'vvi', 'GSVIVG01011353001' => 'vvi', 'GSVIVG01020720001' => 'vvi', 'GSVIVG01021226001' => 'vvi', 'GSVIVG01029951001' => 'vvi', 'HanXRQChr02g0056401' => 'han', 'HanXRQChr05g0157791' => 'han', 'HanXRQChr11g0348161' => 'han', 'HanXRQChr13g0398961' => 'han', 'HanXRQChr14g0449301' => 'han', 'HanXRQChr14g0449951' => 'han', 'HanXRQChr16g0526081' => 'han', 'HanXRQChr17g0559221' => 'han', 'Haze_06215' => 'cav', 'Haze_13401' => 'cav', 'Haze_14569' => 'cav', 'Haze_18556' => 'cav', 'Haze_20438' => 'cav', 'Haze_22298' => 'cav', 'Hma1.2p1_0178F.1_g078730' => 'hma', 'Hma1.2p1_0449F.1_g155180' => 'hma', 'Hma1.2p1_1039F.1_g250830' => 'hma', 'HPP92_009727' => 'vpl', 'HPP92_017661' => 'vpl', 'HPP92_021644' => 'vpl', 'HPP92_021766' => 'vpl', 'Hund02538' => 'sun', 'Hund13231' => 'sun', 'Hund15119' => 'sun', 'Hund15630' => 'sun', 'Hund21170' => 'sun', 'Lalb_Chr02g0157331' => 'lal', 'Lalb_Chr02g0159581' => 'lal', 'Lalb_Chr03g0029991' => 'lal', 'Lalb_Chr06g0175451' => 'lal', 'Lalb_Chr08g0235221' => 'lal', 'Lalb_Chr14g0364741' => 'lal', 'Lalb_Chr21g0317271' => 'lal', 'Lalb_Chr21g0318921' => 'lal', 'Lalb_Chr22g0356971' => 'lal', 'Lj1g0008752' => 'lja', 'Lj1g0015292' => 'lja', 'Lj1g0017770' => 'lja', 'Lj1g0024516' => 'lja', 'Lj2g0001531' => 'lja', 'Lj3g0016576' => 'lja', 'Lj3g0016699' => 'lja', 'Lj5C114T9' => 'lonja', 'Lj6g0026632' => 'lja', 'Lj7A400T33' => 'lonja', 'Lj8A100T101' => 'lonja', 'Lj9C434T19' => 'lonja', 'Lsat_1_v5_gn_1_18180' => 'lsa', 'Lsat_1_v5_gn_1_55180' => 'lsa', 'Lsat_1_v5_gn_1_86401' => 'lsa', 'Lsat_1_v5_gn_2_88760' => 'lsa', 'Lsat_1_v5_gn_3_20180' => 'lsa', 'Lsat_1_v5_gn_5_24060' => 'lsa', 'Lsat_1_v5_gn_6_31641' => 'lsa', 'Lsat_1_v5_gn_8_141080' => 'lsa', 'Manes.01G023300' => 'mes', 'Manes.02G108100' => 'mes', 'Manes.05G116200' => 'mes', 'Manes.09G137600' => 'mes', 'Manes.15G179300' => 'mes', 'Manes.16G040800' => 'mes', 'Manes.17G023000' => 'mes', 'Manes.17G056700' => 'mes', 'Manes.18G065100' => 'mes', 'Mapoly0070s0038' => 'mpo', 'MBI01_g12900_MAGBIO' => 'mbi', 'MBI02_g33234_MAGBIO' => 'mbi', 'MBI07_g09565_MAGBIO' => 'mbi', 'MBI11_g23649_MAGBIO' => 'mbi', 'MBI14_g23870_MAGBIO' => 'mbi', 'MBI14_g33801_MAGBIO' => 'mbi', 'MBI14_g33802_MAGBIO' => 'mbi', 'MBI14_g38784_MAGBIO' => 'mbi', 'MBI14_g39138_MAGBIO' => 'mbi', 'MBI14_g41635_MAGBIO' => 'mbi', 'MBI14_g42932_MAGBIO' => 'mbi', 'MBI14_g44937_MAGBIO' => 'mbi', 'MBI15_g16865_MAGBIO' => 'mbi', 'MBI15_g16868_MAGBIO' => 'mbi', 'MCO11G538' => 'mco', 'MD06G1208200' => 'mdo', 'MD09G1048100' => 'mdo', 'MD09G1236500' => 'mdo', 'MD12G1009100' => 'mdo', 'MD12G1009200' => 'mdo', 'MD14G1006600' => 'mdo', 'MD14G1218600' => 'mdo', 'MD15G1373300' => 'mdo', 'MD17G1048300' => 'mdo', 'MD17G1266100' => 'mdo', 'Medtr2g016230' => 'mtr', 'Medtr2g055320' => 'mtr', 'Medtr2g058330' => 'mtr', 'Medtr2g084225' => 'mtr', 'Medtr4g080083' => 'mtr', 'Medtr5g064550' => 'mtr', 'Medtr6g011530' => 'mtr', 'Medtr6g027730' => 'mtr', 'Medtr6g027740' => 'mtr', 'Medtr7g009710' => 'mtr', 'Medtr7g086380' => 'mtr', 'MELO3C008836.2' => 'cme', 'MELO3C009886.2' => 'cme', 'MELO3C017267.2' => 'cme', 'MELO3C034785.2' => 'cme', 'Migut.D01485' => 'egut', 'Migut.H00897' => 'egut', 'Migut.J00773' => 'egut', 'Migut.M00267' => 'egut', 'MSTRG.15088' => 'ama', 'MSTRG.19357' => 'ama', 'MSTRG.23956' => 'ama', 'MSTRG.3222' => 'ama', 'MSTRG.3318' => 'ama', 'MSTRG.4501' => 'ama', 'MSTRG.5929' => 'ama', 'MSTRG.6786' => 'ama', 'Nitab4.5_0000249g0190' => 'nta', 'Nitab4.5_0000274g0040' => 'nta', 'Nitab4.5_0000564g0230' => 'nta', 'Nitab4.5_0000646g0140' => 'nta', 'Nitab4.5_0000785g0170' => 'nta', 'Nitab4.5_0004342g0100' => 'nta', 'Nitab4.5_0004409g0040' => 'nta', 'Nitab4.5_0004785g0050' => 'nta', 'Nitab4.5_0005828g0010' => 'nta', 'Nitab4.5_0006142g0040' => 'nta', 'Nitab4.5_0007744g0010' => 'nta', 'Nitab4.5_0009739g0050' => 'nta', 'Nn1g04440' => 'nnu', 'Nn1g05434' => 'nnu', 'Nn1g09173' => 'nnu', 'Nn2g14517' => 'nnu', 'Nn3g17143' => 'nnu', 'Nn3g17621' => 'nnu', 'Nn4g23069' => 'nnu', 'Nn5g30020' => 'nnu', 'Oeu003869.1' => 'oeu', 'Oeu021373.1' => 'oeu', 'Oeu031814.1' => 'oeu', 'Oeu043895.1' => 'oeu', 'Oeu053237.1' => 'oeu', 'Oeu063103.1' => 'oeu', 'Os01g0185500' => 'osa', 'Os02g0320000' => 'osa', 'Os03g0654700' => 'osa', 'Os03g0655100' => 'osa', 'Os04g0151900' => 'osa', 'Os05g0592300' => 'osa', 'Os08g0133000' => 'osa', 'Os08g0133700' => 'osa', 'Os08g0480400' => 'osa', 'Os09g0316000' => 'osa', 'Os09g0471000' => 'osa', 'Os12g0623600' => 'osa', 'Peaxi162Scf00009g00343' => 'pax', 'Peaxi162Scf00017g03133' => 'pax', 'Peaxi162Scf00129g00430' => 'pax', 'Peaxi162Scf00229g01210' => 'pax', 'Peaxi162Scf00469g00413' => 'pax', 'PGR042G2520' => 'pgr', 'PGR042G3309' => 'pgr', 'PGR083G0703' => 'pgr', 'PGR142G1254' => 'pgr', 'PGSC0003DMG400001313' => 'stu', 'PGSC0003DMG400006936' => 'stu', 'PGSC0003DMG400018080' => 'stu', 'PGSC0003DMG400020418' => 'stu', 'PGSC0003DMG400024609' => 'stu', 'Phvul.001G114800' => 'pvu', 'Phvul.004G026900' => 'pvu', 'Phvul.005G094500' => 'pvu', 'Phvul.006G175200' => 'pvu', 'Phvul.008G043100' => 'pvu', 'Phvul.008G176400' => 'pvu', 'Phvul.009G191000' => 'pvu', 'Phvul.011G129215' => 'pvu', 'Potri.004G058000' => 'ptr', 'Potri.004G129400' => 'ptr', 'Potri.011G067300' => 'ptr', 'Potri.012G057400' => 'ptr', 'Potri.013G064200' => 'ptr', 'Potri.015G055600' => 'ptr', 'Potri.017G079400' => 'ptr', 'Potri.019G038851' => 'ptr', 'Pp3c16_7770' => 'ppa', 'Pp3c16_8663' => 'ppa', 'Pp3c27_300' => 'ppa', 'Pp3c6_9330' => 'ppa', 'PRCOL_00001725' => 'pco', 'Prupe.1G521700' => 'ppe', 'Prupe.3G116600' => 'ppe', 'Prupe.3G270900' => 'ppe', 'Prupe.4G062500' => 'ppe', 'Prupe.5G212700' => 'ppe', 'Prupe.7G011000' => 'ppe', 'Prupe.8G212000' => 'ppe', 'Psat1g028080' => 'psa', 'Psat1g075600' => 'psa', 'Psat1g090040' => 'psa', 'Psat1g197760' => 'psa', 'Psat2g070320' => 'psa', 'Psat3g087480' => 'psa', 'Psat3g196280' => 'psa', 'Psat5g247120' => 'psa', 'PSO063G5316' => 'pso', 'PSO229G0131' => 'pso', 'PSO339G1601' => 'pso', 'PSO384G1691' => 'pso', 'PSO591G0082' => 'pso', 'PSO675G6964' => 'pso', 'PSO782G0001' => 'pso', 'PSO832G2528' => 'pso', 'QL02p080838' => 'qlo', 'QL05p047523' => 'qlo', 'QL07p017648' => 'qlo', 'QL08p041996' => 'qlo', 'QL10p022014' => 'qlo', 'QL10p022034' => 'qlo', 'QL12p037445' => 'qlo', 'RcHm_v2.0_Chr2g0129981' => 'rch', 'RcHm_v2.0_Chr2g0169021' => 'rch', 'RcHm_v2.0_Chr3g0471031' => 'rch', 'RcHm_v2.0_Chr3g0496281' => 'rch', 'RcHm_v2.0_Chr7g0184171' => 'rch', 'RcHm_v2.0_Chr7g0242701' => 'rch', 'Rhsim03G0051000' => 'rsi', 'Rhsim04G0074700' => 'rsi', 'Rhsim04G0074800' => 'rsi', 'Rhsim06G0130500' => 'rsi', 'Rhsim08G0066700' => 'rsi', 'Rhsim11G0054200' => 'rsi', 'Sabra04G0087900' => 'sbr', 'Sabra11G0048700' => 'sbr', 'Sabra13G0056200' => 'sbr', 'Sabra15G0080800' => 'sbr', 'Sabra17G0070900' => 'sbr', 'Sabra19G0049800' => 'sbr', 'SalBow1G7181' => 'sbo', 'SalBow3G2745' => 'sbo', 'SalBow7G0546' => 'sbo', 'Sc01g0006260' => 'sci', 'Sc04g0004060' => 'sci', 'Sc11g0006950' => 'sci', 'Sc17g0005710' => 'sci', 'Sed0002666' => 'sed', 'Sed0006296' => 'sed', 'Sed0008636' => 'sed', 'Sed0011142' => 'sed', 'Sed0016272' => 'sed', 'Sed0026052' => 'sed', 'Sed0027538' => 'sed', 'SEGI_01566' => 'sgi', 'SEGI_01833' => 'sgi', 'SEGI_05451' => 'sgi', 'SEGI_05872' => 'sgi', 'SEGI_09585' => 'sgi', 'SEGI_16312' => 'sgi', 'SEGI_22097' => 'sgi', 'SEGI_24950' => 'sgi', 'SEGI_33113' => 'sgi', 'SEGI_36656' => 'sgi', 'SEGI_38841' => 'sgi', 'SGA_v2.0_scaffold135G34774' => 'sas', 'SGA_v2.0_scaffold171G38945' => 'sas', 'SGA_v2.0_scaffold205G41765' => 'sas', 'SGA_v2.0_scaffold236G43783' => 'sas', 'SGA_v2.0_scaffold31G12785' => 'sas', 'SGA_v2.0_scaffold9G04836' => 'sas', 'SHI18985' => 'shi', 'SHI18986' => 'shi', 'SHI18987' => 'shi', 'SHI19486' => 'shi', 'SHI22275' => 'shi', 'SMO118G0471' => 'smo', 'SMO358G0648' => 'smo', 'Solyc02g067440.3' => 'sly', 'Solyc02g087740.3' => 'sly', 'Solyc03g113130.3' => 'sly', 'Solyc03g114510.4' => 'sly', 'Solyc07g055150.3' => 'sly', 'Solyc10g007990.3' => 'sly', 'Sopen02g016580' => 'spe', 'Sopen02g032470' => 'spe', 'Sopen03g032190' => 'spe', 'Sopen03g033600' => 'spe', 'Sopen07g027070' => 'spe', 'Sopen10g003860' => 'spe', 'Sopen11g010330' => 'spe', 'Sp1g16440' => 'spa', 'Sp4g24810' => 'spa', 'Sp5g04180' => 'spa', 'Sp6g28950' => 'spa', 'Sp7g02150' => 'spa', 'TAR369G0161' => 'tar', 'TAR374G1014' => 'tar', 'TAR622G0842' => 'tar', 'TAR624G1269' => 'tar', 'TAR625G0467' => 'tar', 'TAR626G1665' => 'tar', 'TAR627G0922' => 'tar', 'TAR629G0207' => 'tar', 'TAR629G0794' => 'tar', 'TAR629G1431' => 'tar', 'TAR636G3184' => 'tar', 'THA.LOC104802262' => 'tha', 'THA.LOC104802977' => 'tha', 'THA.LOC104807124' => 'tha', 'THA.LOC104808022' => 'tha', 'THA.LOC104812123' => 'tha', 'THA.LOC104821041' => 'tha', 'THA.LOC104822368' => 'tha', 'THA.LOC104823929' => 'tha', 'Thecc.01G152000' => 'tca', 'Thecc.03G113400' => 'tca', 'Thecc.04G076200' => 'tca', 'Thecc.05G243800' => 'tca', 'Thecc.06G169200' => 'tca', 'Thecc.08G103500' => 'tca', 'Thhalv10006208m.g' => 'esa', 'Thhalv10008420m.g' => 'esa', 'Thhalv10014207m.g' => 'esa', 'Thhalv10017159m.g' => 'esa', 'Thhalv10027872m.g' => 'esa', 'TPR.G17871' => 'tpr', 'TPR.G21042' => 'tpr', 'TPR.G27339' => 'tpr', 'TPR.G29879' => 'tpr', 'TPR.G39596' => 'tpr', 'TPR.G4274' => 'tpr', 'TPR.G4283' => 'tpr', 'TWI14G1265' => 'twi', 'TWI23G0882' => 'twi', 'TWI32G0641' => 'twi', 'TWI32G1184' => 'twi', 'TWI32G1302' => 'twi', 'TWI34G1635' => 'twi', 'TWI59G0605' => 'twi', 'TWI60G0359' => 'twi', 'TWI60G0541' => 'twi', 'TWI81G1087' => 'twi', 'unitig_0.g2035' => 'ugi', 'unitig_26.g9159' => 'ugi', 'unitig_27.g24740' => 'ugi', 'unitig_578.g15939' => 'ugi', 'unitig_578.g15940' => 'ugi', 'unitig_62.g23137' => 'ugi', 'unitig_62.g23408' => 'ugi', 'unitig_699.g19412' => 'ugi', 'vmacro07562' => 'vma', 'vmacro09214' => 'vma', 'vmacro09215' => 'vma', 'vmacro12383' => 'vma', 'vmacro17649' => 'vma', 'vmacro17650' => 'vma', 'vmacro18207' => 'vma', 'VMungo0464G0731' => 'vmu', 'VMungo0540G1309' => 'vmu', 'VMungo0647G1993' => 'vmu', 'VMungo1080G1231' => 'vmu', 'VMungo1127G0114' => 'vmu', 'VMungo1309G0507' => 'vmu', 'VMungo1309G0805' => 'vmu', 'VMungo1383G0902' => 'vmu', 'VMungo1383G1821' => 'vmu', 'Zm00001eb032270' => 'zma', 'Zm00001eb032280' => 'zma', 'Zm00001eb033540' => 'zma', 'Zm00001eb052820' => 'zma', 'Zm00001eb052830' => 'zma', 'Zm00001eb121630' => 'zma', 'Zm00001eb152530' => 'zma', 'Zm00001eb297330' => 'zma', 'Zm00001eb309740' => 'zma', 'Zm00001eb370560' => 'zma', 'Zm00001eb433180' => 'zma' ) $gf_id = 'HOM05D000819' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000819' ) $data_identifier = 'HOM05D000819' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 32, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 19, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 8, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 14, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 11, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 12, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 12, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 11, 'sas' => (int) 6, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1